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10X Genomics cell ranger cloud pipeline 10x genomics
Cell Ranger Cloud Pipeline 10x Genomics, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+pipeline/cellranger/pm42314672-253-0-4
Average 86 stars, based on 1 article reviews
cell ranger cloud pipeline 10x genomics - by Bioz Stars, 2026-10
86/100 stars

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Sequencing:

Article Title: Engineering functional ventral midbrain dopaminergic neurons in human organoids through WNT modulation and bioreactor culture.
Article Snippet: .. The sequencing data were demultiplexed and filtered via the 10X Genomics Cell Ranger pipeline to generate filtered gene-barcode matrices, which were used as input for downstream analysis with Seurat (v5.3.0) and R (v4.4.1) [77, 78]. ..

Article Title: TIGIT-targeted IL-12 fusion protein engages NK and CD8 + T cells for potent tumor immunotherapy.
Article Snippet: .. Sequencing data were analyzed using the Cell Ranger pipeline (10x Genomics) for demultiplexing, read alignment, and unique molecular identifier (UMI) quantification. ..

Article Title: Fibroblast- and Macrophage-Derived Thrombospondin-1 Orchestrates the Fibroinflammatory Niche in Metabolic Dysfunction-Associated Steatohepatitis-Induced Fibrosis.
Article Snippet: Single-cell libraries were prepared using the Chromium Single Cell 3ʹ v3.1 kit (10x Genomics, Pleasanton, CA, USA) according to the manufacturer’s protocol and sequenced on an Illumina NovaSeq 6000 platform (Illumina, San Diego, CA, USA). .. The raw sequencing data were processed using the Cell Ranger pipeline (10x Genomics, v6.1.2), which includes alignment to the mouse refer- ence genome (mm10), barcode processing, and gene counting. ..

Article Title: Dysregulated flow responses drive pathogenesis in a cellular model of Sturge–Weber syndrome
Article Snippet: Sequencing was performed on a NovaSeq 6000 system (Illumina) to generate paired-end reads, with a sequencing depth of approximately 84,000–159,000 reads per cell. .. Raw sequencing data were processed using the Cell Ranger pipeline (version 6.1.2, 10x Genomics) with default parameters. ..

Article Title: Beckwith-Wiedemann syndrome multiomic analysis of hepatoblastoma uncovers unique tumour heterogeneity and cellular landscapes, including transition cells leading to tumour formation.
Article Snippet: Gene expression libraries were uniquely indexed using the Chromium dual Index Kit, pooled, and sequenced on an Illumina NovaSeq 6000 sequencer in a paired-end, dual indexing run, targeting 20,000 mean reads per cell. .. Data was then processed using the Cell Ranger pipeline (10x Genomics, version 3.1.0) for demultiplexing and alignment of sequencing reads to the (reference hg38) transcriptome, as described [4]. ..

Article Title: Targeted delivery of TGF-β inhibitor via LHRH-NanoTi reverses the NAT10/ac4C-mediated cisplatin-induced immunosuppressive tumor microenvironment in ovarian cancer.
Article Snippet: Mice were intraperitoneally injected with 5 × 106 luciferase-expressing ID8, sgNC ID8, or sgNat10 ID8 cells to establish the model. Two weeks postinoculation, treatments were administered according to experimental protocols: cisplatin (2.5 mg/kg, i.p.), anti-TGF-β antibody (5 mg/kg, i.p., #BP0057, BioXcell), isotype control IgG1 (5 mg/kg, i.p., #BP0057, BioXcell), HTS466284 (Ti, 10 mg/kg, i.v., #HY-13462, MCE), or NanoTi (Ti-equivalent dose, 10 mg/kg, i.v.). .. Raw sequencing data were processed using the Cell Ranger pipeline (v3.0.2, 10x Genomics) to generate a gene-cell count matrix. ..

Polymerase Chain Reaction:

Article Title: Dopamine drives persistent remodelling of the maternal brain.
Article Snippet: .. FastQ files were processed with the 10X Genomics Cell Ranger pipeline (v7.1.0) to demultiplex reads, align them to the mouse genome (mm10-2020-A), remove PCR duplicates, and generate gene expression matrices. ..

Gene Expression:

Article Title: Dopamine drives persistent remodelling of the maternal brain.
Article Snippet: .. FastQ files were processed with the 10X Genomics Cell Ranger pipeline (v7.1.0) to demultiplex reads, align them to the mouse genome (mm10-2020-A), remove PCR duplicates, and generate gene expression matrices. ..

Infection:

Article Title: Linking childhood interstitial lung disease to IARS-related disorder: clinical and preliminary functional studies in four new cases.
Article Snippet: BALF samples were fixed with electron microscope fixation liquid (Solarbio, China) overnight and were used for transmission electron microscopy. .. ScRNA-seq was performed on PBMCs (collected in a clinically stable, infection-free state) from Patient 4 and his fraternal twin brother (healthy control), processed using the Cell Ranger pipeline (version 3.0.1, 10x Genomics). ..

Control:

Article Title: Linking childhood interstitial lung disease to IARS-related disorder: clinical and preliminary functional studies in four new cases.
Article Snippet: BALF samples were fixed with electron microscope fixation liquid (Solarbio, China) overnight and were used for transmission electron microscopy. .. ScRNA-seq was performed on PBMCs (collected in a clinically stable, infection-free state) from Patient 4 and his fraternal twin brother (healthy control), processed using the Cell Ranger pipeline (version 3.0.1, 10x Genomics). ..



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